Kawashima Y, Pfafferott K, Frater J, Matthews P, Payne R, Addo M, Gatanaga H, Fujiwara M, Hachiya A, Koizumi H, Kuse N, Oka S, Duda A, Prendergast A, Crawford H, Leslie A, Brumme Z, Brumme C, Allen T, Brander C, Kaslow R, Tang J, Hunter E, Allen S, Mulenga J, Branch S, Roach T, John M, Mallal S, Ogwu A, Shapiro R, Prado JG, Fidler S, Weber J, Pybus OG, Klenerman P, Ndung’u T, Phillips R, Heckerman D, Harrigan PR, Walker BD, Takiguchi M, Goulder P. Adaptation of HIV-1 to human leukocyte antigen class I. Nature. 2009. [Epub ahead of print]
The rapid and extensive spread of the human immunodeficiency virus (HIV) epidemic provides a rare opportunity to witness host-pathogen co-evolution involving humans. A focal point is the interaction between genes encoding human leukocyte antigen (HLA) and those encoding HIV proteins. HLA molecules present fragments (epitopes) of HIV proteins on the surface of infected cells to enable immune recognition and killing by CD8(+) T cells; particular HLA molecules, such as HLA-B*57, HLA-B*27 and HLA-B*51, are more likely to mediate successful control of HIV infection. Mutation within these epitopes can allow viral escape from CD8(+) T-cell recognition. Here Kawashima and colleagues analysed viral sequences and HLA alleles from >2,800 subjects, drawn from 9 distinct study cohorts spanning 5 continents. Initial analysis of the HLA-B*51-restricted epitope, TAFTIPSI (reverse transcriptase residues 128-135), showed a strong correlation between the frequency of the escape mutation I135X and HLA-B*51 prevalence in the 9 study cohorts (P = 0.0001). Extending these analyses to incorporate other well-defined CD8(+) T-cell epitopes, including those restricted by HLA-B*57 and HLA-B*27, showed that the frequency of these epitope variants (n = 14) was consistently correlated with the prevalence of the restricting HLA allele in the different cohorts (together, P < 0.0001), demonstrating strong evidence of HIV adaptation to HLA at a population level. This process of viral adaptation may dismantle the well-established HLA associations with control of HIV infection that are linked to the availability of key epitopes, and highlights the challenge for a vaccine to keep pace with the changing immunological landscape presented by HIV.
Editors' note: The finding that HIV has been evolving at the population level over the past couple of decades to neutralise the slower disease progression advantage conferred by certain protective HLA genetic profiles is disturbing. Escape mutations that do not revert but rather persist stably after HIV transmission appear to accumulate at the population level over time, changing the dynamics of immune control and disease progression. If more effective immune responses now come into play that would be good news but, for now, these findings underscore yet another challenge for vaccine development – keeping up with the moving target of HIV as it worms its way around human immune responses.
Richman DD, Margolis DM, Delaney M, Greene WC, Hazuda D, Pomerantz RJ. The challenge of finding a cure for HIV infection. Science. 2009;323(5919):1304-7.
Although combination therapy for HIV infection represents a triumph for modern medicine, chronic suppressive therapy is required to contain persistent infection in reservoirs such as latently infected CD4+ lymphocytes and cells of the macrophage-monocyte lineage. Despite its success, chronic suppressive therapy is limited by its cost, the requirement of lifelong adherence, and the unknown effects of long-term treatment. This review discusses current understanding of suppressive antiretroviral therapy, the latent viral reservoir, and the needs for and challenges of attacking this reservoir to achieve a cure.
Editors' note: Ongoing viraemia detected at the level of 1 to 50 copies/ml in the majority of patients is thought to result from episodic production of HIV by long-lived cells rather than ongoing rounds of replication. Exploring how the mechanisms that drive this latency can be therapeutically exploited, this review paper argues that drug-free remission should now be the new goal of HIV therapeutics. It proposes a public-private joint research venture, called the HIV Latency Collaboratory, which would see government contributing funding, regulatory oversight, and coordination; industry contributing funding, drug discovery, technology, and expertise; and academia contributing ideas and investigative capacity.
Biloglav Z, Zgaga L, Smoljanovic M, Hayward C, Polasek O, Kolcic I, Vitart V, Zemunik T, Boraska V, Torlak V, Mulic R, Ropac D, Grkovic I, Rudan D, Ristic S, Barbalic M, Campbell H, Wright AF, Rudan I. Historic, Demographic, and Genetic Evidence for Increased Population Frequencies of CCR5Delta32 Mutation in Croatian Island Isolates after Lethal 15 th Century Epidemics. Croat Med J. 2009;50(1):34-42.
Biloglav and colleagues assessed the frequency of 32 base pair deletion in CCR5 (CCR5Delta32), which has been shown to confer resistance to HIV infection in a homozygous form, in 10 isolated island communities of Dalmatia, Croatia, with different histories of exposure to epidemics during and since the medieval period. In 2002, DNA analysis of 100 randomly selected individuals from each of the 10 isolated communities of 5 Croatian islands (Susak, Rab, Vis, Lastovo, and Mljet) showed high levels of 3-generational endogamy, indicating limited gene flow. Five of the communities were decimated by epidemics of unknown cause between 1449-1456, while the other 5 villages remained unaffected. Genotyping of the CCR5 gene was performed using the polymerase chain reaction method with primers flanking the region containing 32-bp deletion. The frequency of CCR5Delta32 in the 5 villages affected by the epidemic was 6.1-10.0%, and 1.0-3.8% in the 5 unaffected villages. The Delta32 mutation was found in 71 of 916 alleles among the individuals from the affected villages (7.5%), and in 24 of 968 alleles in unaffected villages (2.5%, chi(2)=27.3, P<10-6). A previous study in 303 random Croatian blood donors showed the frequency of the CCR5 Delta32 of 7.1% in the general population. The difference remained significant after correcting for population structure using both STRAT and STRUCTURE software and the genomic control test, to ensure results do not arise from the background genetic differences. The authors concluded that their results and historical evidence, suggest that the mid-15 th century epidemic could have acted as a selection pressure for the CCR5Delta32 mutation.
Editors' note: This fascinating article enters the ongoing debate on the genetic and epidemiological ‘archaeology’ of the CCR5Delta32 mutation which provides almost complete resistance to HIV in homozygous form (both gene alleles) and partial resistance/slower progression to AIDS in heterozygous form. The average frequency of this mutation in European populations is 10% but it is almost absent in African, American Indian, and East Asian populations. Based on this analysis of historical and genetic information obtained for 10 isolated communities in Croatia, this research programme (entitled ’10,001 Dalmations’) concludes that two exceedingly lethal viral epidemics characterised by peak incidence in the summer months, a long incubation period (about 1 month), 70% cumulative mortality, and person-to-person transmission, were most likely a hemorrhagic fever rather than bubonic plague or smallpox. The disease, thought to have arrived from northern Europe through the ‘route of Amber’ to Venice, caused the fall of Croatian Benedictine monasteries where the ill sought treatment. These epidemics could have created selection pressure upon an already widespread but rare CCR5Delta32 mutation resulting in the unusually high frequencies now observed across Europe today.